Research Articles (Biodiversity and Conservation Biology)

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Browsing by Subject "Africa"

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    African rangelands and pastoralism in a changing continent: Perspectives and opportunities
    (Taylor and Francis Group, 2023) Samuels, M Igshaan; Egeru, Anthony; Mugabe, Prisca
    Eighty-five years ago, Africa was described as a land of promise because it provided an immense opportunity for maximum return in the minimum time (Olaniyan 2000). It was treated this way because it was considered more for its deposits of natural wealth and less for its potential for settlement or as a destination market for goods and services produced in Europe and elsewhere (Le Clair 1937). For over 50 years, this narrative held ground but in the last 20 years, perception has shifted with Africa becoming a destination market and a growth opportunity creator, whilst holding ground as a resource provider (Sy 2016).
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    In quest of contact: phylogeography of helmeted terrapins (Pelomedusa galeata, P. subrufa sensu stricto)
    (PeerJ, 2018) Vamberger, Melita; Hofmeyr, Margaretha D.; Ihlow, Flora; Fritz, Uwe
    Based on rangewide sampling and three mitochondrial and two nuclear markers (together up to 1,850 bp and 1,840 bp, respectively), we examine the phylogeography of two helmeted terrapin species (Pelomedusa galeata and P. subrufa sensu stricto) and infer shifts of climatically suitable spaces since the Last Glacial Maximum using a modeling approach. Whilst P. galeata displays significant phylogeographic structuring across its range and consists of two deeply divergent lineages that could represent distinct species, P. subrufa shows no obvious phylogeographic differentiation. This seems to be related to historically stable or fluctuating ranges. One of the lineages within P. galeata appears to be confined to the westernmost, winter-rainfall region of South Africa and deserves special conservational attention due to the scarcity of surface water. The other lineage is distributed further east and is differentiated in three weakly supported subclades with parapatric distribution; one occurring inland, and two along the south and east coasts, respectively. As far as is known, P. subrufa occurs in South Africa only in the northeast of the country (Limpopo, Mpumalanga) and we report the species for the first time from the Lapalala Wilderness Area in the Waterberg region (Limpopo), approximately 350 km further west than previously recorded. We confirmed the occurrence of P. galeata only 80 km south of Lapalala. Thus, a sympatric occurrence of P. galeata and P. subrufa is possible. Another putative contact zone, for the two lineages within P. galeata, must be located in the Western Cape region, and further contact zones are likely for the eastern subclades within P. galeata. The nuclear loci provided no evidence for gene flow across taxa or genetic clusters within taxa. Future investigations should use denser sampling from putative contact zones and more nuclear markers to re-examine this situation. Despite few phylogeographic studies published for southern African biota, it seems likely that differentiation follows general rules, and that climate and physiographic barriers (e.g., the Great Escarpment) have shaped phylogeographic patterns.
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    Infaunal benthic communities from the inner shelf off southwestern Africa are characterised by generalist species
    (Public Library Science, 2015) Steffani, Nina; Sedick, Safiyya; Rogers, John
    Infaunal communities of benthic macro-organisms ( 1mm length) were studied from 81 samples collected across nine sites to the north and south of the Orange River in the Benguela upwelling ecosystem in 2003, with a view to describing communities and understanding the drivers of regional community structure, as well as to document diversity and to examine geographic affinities. Although the fauna was dominated by polychaetes and peracarid crustaceans, patterns in community structure could only weakly be explained by the measured environment (~35%). This is attributed to the generalist nature of the species recovered, which were widely distributed amongst different sediments, water-depths and latitudes. The fauna is dominated by species that enjoy a widespread regional and global distribution and is characterised by relatively low diversity, which is discussed.
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    South African seaweed aquaculture: A sustainable development example for other African coastal countries
    (Academic Journals, 2013) Amosu, Albert O.; Robertson-Andersson, Deborah; Maneveldt, Gavin; Anderson, Robert J.; Bolton, John J.
    The green seaweed Ulva is one of South Africa's most important aquaculture products, constituting an important feed source particularly for abalone (Haliotis midae L.), and utilized as a bioremediation tool and other benefits such as biomass for biofuel production and for integrated aquaculture. Besides Ulva spp, Gracilaria spp. are also cultivated. Wild seaweed harvest in South Africa totals 7,602 mt, compared to 2,015 mt of cultivated Ulva. To mitigate for the reliance on wild harvesting, the South African seaweed aquaculture industry has grown rapidly over the past few decades. On-land integrated culture units, with paddle-wheel raceways, are now widely viewed as the preferred method of production for the industry. The success of seaweed aquaculture in South Africa is due to a number of natural and human (industrial) factors. The development of the seaweed aquaculture industry has paralleled the growth of the abalone industry, and has been successful largely because of bilateral technology transfer and innovation between commercial abalone farms and research institutions. In South Africa seaweeds have been used commercially as feedstock for phycocolloid production, for the production of abalone feed, and the production of Kelpak and Afrikelp, which are plant-growth stimulants used in the agricultural sector. Additionally, Ulva is being investigated for large-scale biogas production. The South African seaweed industry provides a template that could be used by other coastal African nations to further their undeveloped aquaculture potential.
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    Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa
    (Public Library of Science, 2021) Ras, V; Botha, G; Aron, S
    With more microbiome studies being conducted by African-based research groups, there is an increasing demand for knowledge and skills in the design and analysis of microbiome studies and data. However, high-quality bioinformatics courses are often impeded by differences in computational environments, complicated software stacks, numerous dependencies, and versions of bioinformatics tools along with a lack of local computational infrastructure and expertise. To address this, H3ABioNet developed a 16S rRNA Microbiome Intermediate Bioinformatics Training course, extending its remote classroom model. The course was developed alongside experienced microbiome researchers, bioinformaticians, and systems administrators, who identified key topics to address. Development of containerised workflows has previously been undertaken by H3ABioNet, and Singularity containers were used here to enable the deployment of a standard replicable software stack across different hosting sites. The pilot ran successfully in 2019 across 23 sites registered in 11 African countries, with more than 200 participants formally enrolled and 106 volunteer staff for onsite support.