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Browsing by Subject "Bioinformatics"
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Item Building portable pipelines for reproducible scientific workflows: The H3ABionet Pipelines Project on E n(Universty of the Western Cape, 2018) Hazelhurst, ScottItem Combat-tb: an integrated environment for m tuberculosis data analysis(Universty of the Western Cape, 2018) Van Heusden, PeterItem Community driven training for biological data analysis with the galaxy training network(Universty of the Western Cape, 2018) Batut, BéréniceItem From biobanking to bioinformatics(Universty of the Western Cape, 2018) Bendou, HocineItem High throughput computing in bioinformatics: workflows, containers and emerging paradigms(University of the Western Cape, 2018) Van Heusden, PeterNext Generation Sequencing has brought genomic analysis within the range of a great number of laboratories, while increasing the demand for bioinformatic analysis. These typically comprise workflows composed out of chains of analyses with data flowing between workflow steps. Such analysis is amenable to High Throughput Computing, a form of high performance computing characterised by a focus on overall analysis throughput rather than optimisation of a single application. In recent years workflow languages and container technologies have become a key part in composing efficient, reproducible and re-usable bionformatic workflows. These technologies, however, pose a challenge for High Performance Computing providers as they require different characteristics from an execution environment to that provided by traditional HPC clusters. These challenges will be discussed and some approaches to solving them will be discussed.Item The COMBAT-TB Project(University of the Western Cape, 2018) Van Heusden, PeterPresentation to Galaxy Africa 2018 (http://galaxyafrica.sanbi.ac.za/) conference on COMBAT TB project.Item Understanding M. tuberculosis variants using Galaxy and the COMBAT TB Explorer(Universty of the Western Cape, 2018) Lose, Thoba